cobs_index.CompactIndexParameters

class CompactIndexParameters

Parameter object for compact_construct()

__init__(self: cobs_index.CompactIndexParameters) → None: constructor, fills the object with default parameters.

Methods

constructor, fills the object with default parameters.

Attributes

`canonicalize`	canonicalization flag for base pairs, default true
`clobber`	clobber erase output directory if it exists, default false
`continue`	continue in existing output directory, default false
`false_positive_rate`	false positive rate, provided by user, default 0.3
`keep_temporary`	keep temporary files during construction, default false
`mem_bytes`	memory to use bytes to create index, default 80% of RAM
`num_hashes`	number of hash functions, provided by user, default 1
`num_threads`	number of threads to use, default all cores
`page_size`	page size (number of documents grouped into a classic index with identical parameters), either provided by user or calculated from number of documents if zero, default 0
`term_size`	length of terms / k-mers, default 31